2018 Publications

  • Shao Y, Taylor S, Marshall N, Morioka C, Zeng-Treitler Q. Clinical Text Classification with Word Embedding Features vs Bag-of-Words. The 5th Workshop on Big Data Analytic Technology for Bioinformatics and Health Informatics IEEE BigData Dec. 2018 conference, 2874-2878.

  • Bui AAT. Optimizing imaging-based clinical decision making processes. World Brain Mapping Conference, Society for Brain Mapping Technologies (SBMT). Los Angeles,California, USA; 2018.
  • Garcia-Gathright JI, Matiasz NJ, Adame C, Sarma KV, Sauer L, Smedley NF, Spiegel ML, Strunck J, Garon EB, Taira RK, Aberle DR, Bui AAT. Evaluating Casama: Contextualized semantic maps for summarization of lung cancer studies. Comput Biol Med. 2018 Jan 1;92:55-63. DOI: 10.1016/j.compbiomed.2017.10.034. Epub 2017 Nov 3. PMID: 29149658; PMCID: PMC5762403. PDF
  • Ing N, Ma Z, Li J, Salemi H, Arnold CW, Knudsen BS, Gertych A. Semantic segmentation for prostate cancer grading by convolutional neural networks. Medical Imaging 2018: Digital Pathology. International Society for Optics and Photonics. 2018. p. 105811B.
  • Li J, Speier W, Ho KC, Sarma KV, Gertych A, Knudsen BS, Arnold CW. An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies. Comput Med Imaging Graph. 2018 Nov;69:125-133. DOI: 10.1016/j.compmedimag.2018.08.003. Epub 2018 Sep 3. PMID: 30243216; PMCID: PMC6173982.
  • Li W, Li J, Sarma KV, Ho KC, Shen S, Knudsen BS, Gertych A, Arnold CW. Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images. IEEE Trans Med Imaging. 2019 Apr;38(4):945-954. DOI: 10.1109/TMI.2018.2875868. Epub 2018 Oct 12. PMID: 30334752; PMCID: PMC6497079. PDF
  • Li W, Wang Y, Cai Y, Arnold CW, Zhao E, Yuan Y. Semi-supervised rare disease detection using generative adversarial network. arXiv preprint arXiv:1812.00547. 2018 Dec 3.
  • Matiasz NJ, Wood J, Doshi P, Speier W, Beckemeyer B, Wang W, Hsu W, Silva AJ. ResearchMaps.org for integrating and planning research. PLoS One. 2018 May 3;13(5):e0195271. DOI: 10.1371/journal.pone.0195271. PMID: 29723213; PMCID: PMC5933701. PDF
  • Meng Y, Speier W, Dzubur E, Spiegel B, Arnold CW. Predicting Patient Health Status using Activity Tracker Data. Proceedings of the 2018 American Medical Informatics Association Annual Symposium. San Francisco; 2018. PDF
  • Petousis P, Naeim A, Mosleh A, Hsu W. Evaluating the Impact of Uncertainty on Risk Prediction: Towards More Robust Prediction Models. AMIA Annu Symp Proc. 2018 Dec 5;2018:1461-1470. PMID: 30815191; PMCID: PMC6371325.
  • Shiwen S, Smedley NF, Rios Piedra EAR, Hsu W. Hybrid Hierarchical Model for Lung Cancer Prediction. International Symposium on Biomedical Imaging (ISBI). 2018.
  • Smedley NF, Ellingson BM, Cloughesy TF, Hsu W. Longitudinal Patterns in Clinical and Imaging Measurements Predict Residual Survival in Glioblastoma Patients. Sci Rep. 2018 Sep 26;8(1):14429. DOI: 10.1038/s41598-018-32397-z. PMID: 30258190; PMCID: PMC6158293. PDF
  • Smedley NF, Hsu W. Using deep neural networks for radiogenomic analysis. Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1529-1533. DOI: 10.1109/ISBI.2018.8363864. Epub 2018 May 24. PMID: 30093961; PMCID: PMC6081189. PDF
  • Speier W, Arnold CW, Chandravadia N, Roberts D, Pendekanti S, Pouratian N. Improving P300 Spelling Rate using Language Models and Predictive Spelling. Brain Comput Interfaces (Abingdon). 2018;5(1):13-22. DOI: 10.1080/2326263X.2017.1410418. Epub 2017 Dec 26. PMID: 30560145; PMCID: PMC6294452. PDF
  • Speier W, Dzubur E, Zide M, Shufelt C, Joung S, Van Eyk JE, Bairey Merz CN, Lopez M, Spiegel B, Arnold CW. Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers. J Am Med Inform Assoc. 2018 Oct 1;25(10):1386-1391. DOI: 10.1093/jamia/ocy067. PMID: 29850807; PMCID: PMC6188512. PDF
  • Winter A, Aberle DR, Hsu W. External validation and Re-Calibration of the Brock Model to Predict Probability of Cancer in Pulmonary Nodules using NLST Data. RSNA. Chicago, USA; 2018.
  • Winter A, Daurès JP, Landais P. Intention-to-treat survival benefit in liver transplantation: Comments on Lai et al. Hepatology. 2018 Apr;67(4):1638-1639. DOI: 10.1002/hep.29755. Epub 2018 Feb 27. PMID: 29272034. PDF
  • Winter A, Féray C, Audureau E, Azoulay D, Antoine C, Daurès JP, Landais P. A Donor Quality Index for liver transplantation: development, internal and external validation. Sci Rep. 2018 Jun 29;8(1):9871. DOI: 10.1038/s41598-018-27960-7. Erratum in: Sci Rep. 2018 Oct 5;8(1):15109. PMID: 29959344; PMCID: PMC6026153. PDF