2017 Publications

  • Hsu W, Petousis P, Yu W, Meng F, Bui AAT. A web-based platform for evaluating and disseminating predictive models. 2017 AMIA Joint Summits on Translational Science. San Francisco,California, USA; 2017.

  • AR E, Cloughesy T, Ellingson B, El-Saden S, Bui AAT, Hsu W. Evaluating the applicability of tumor probability maps as a resource for improved brain tumor segmentation. Proc Ann Society Neuro-Oncology Scientific Meeting, 2017. San Francisco,California, USA; 2017.
  • Chandravadia N, Speier W, Roberts D, Pendekanti S, Pouratian N. Evaluating the effect of stimulus paradigms on typing speed using the P300 speller in an online setting. UC BME Symposium. 2017.
  • Donnadieu-Rigole H, Olive L, Nalpas B, Winter A, Ursic-Bedoya J, Faure S, Pageaux GP, Perney P. Follow-Up of Alcohol Consumption After Liver Transplantation: Interest of an Addiction Team? Alcohol Clin Exp Res. 2017 Jan;41(1):165-170. DOI: 10.1111/acer.13276. Epub 2016 Dec 9. PMID: 27936489PDF
  • Ho K, Speier W, El-Saden S, Arnold C. Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features. AMIA Annu Symp Proc. 2017.
  • Hollada J, Zide M, Speier W, Roter E. Readability assessment of PCORI public abstracts in relation to accessibility. Epidemiology. 2017;28(4):e37–e38.
  • Kuo TT, Rao P, Maehara C, Doan S, Chaparro JD, Day ME, Farcas C, Ohno-Machado  L, Hsu CN. Ensembles of NLP Tools for Data Element Extraction from Clinicsal Notes. AMIA Annu Symp Proc. 2017 Feb 10;2016:1880-1889. eCollection 2016. PubMed PMID: 28269947; PubMed Central PMCID: PMC5333200.
  • Levesque E, Winter A, Noorah Z, Daurès JP, Landais P, Feray C, Azoulay D. Impact of acute-on-chronic liver failure on 90-day mortality following a first liver transplantation. Liver Int. 2017 May;37(5):684-693. DOI: 10.1111/liv.13355. Epub 2017 Feb 27. PMID: 28052486. PDF
  • Li J, Sarma KV, Chung Ho K, Gertych A, Knudsen BS, Arnold CW. A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies. AMIA Annu Symp Proc. 2018 Apr 16;2017:1140-1148. PMID: 29854182; PMCID: PMC5977596.
  • Matiasz NJ, Wood J, Wang W, Hsu W, Silva AJ. Translating literature into causal graphs: Toward automated experiment selection. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Kansas City, MO; 2017. DOI: 10.1109/BIBM.2017.8217713.
  • Matiasz NJ, Wood J, Wang W, Silva AJ, Hsu W. Computer-Aided Experiment Planning toward Causal Discovery in Neuroscience. Front Neuroinform. 2017 Feb 13;11:12. DOI: 10.3389/fninf.2017.00012. PMID: 28243197; PMCID: PMC5304468PDF
  • Mostafavi L, Hollada J, Speier W, Ruehm S. Patients’ Perceptions of Risks and Benefits of Cardiac Imaging. Annual Congress of the European Congress of Radiology. 2017
  • Piedra EAR, Ellingson B, Cloughesy T, Taira RK, El-Saden S, Bui AAT, Hsu W. Hybrid Hierarchical Model for Lung Cancer Prediction. International Symposium on Biomedical Imaging (ISBI). 2017.
  • Piedra EAR, Ellingson B, El-Saden S, Taira RK, Bui AAT, Hsu W. Measuring Tumor Boundary Variability to Improve Automated Segmentation of Brain Tumors Using Multimodal MRI. Poster presented at International Society for Magnetic Resonance in Medicine (ISMRM). 2017.
  • Piedra EAR, Orosz I, Zide M, El-Saden S, Taira RK, Bui AAT, Hsu W. A Usability Study to Evaluate the Impact of a Novel Automated Brain Tumor Assessment Application. Poster presented at American Medical Informatics Association. 2017.
  • Rios Piedra EAR, Taira RK, El-Saden S, Ellingson BM, Bui AAT, Hsu W. Assessing Variability in Brain Tumor Segmentation to Improve Volumetric Accuracy and Characterization of Change. IEEE EMBS Int Conf Biomed Health Inform. 2016 Feb;2016:380-383. DOI: 10.1109/BHI.2016.7455914. Epub 2016 Apr 21. PMID: 28670648; PMCID: PMC5489257.
  • Roberts D, Speier W, Chandravadia N, Pendekanti S, Pouratian N. Optimizing EEG Electrode Configuration in a P300 Speller Brain-Computer Interface: a step toward Clinical Implementation. UC BME Symposium. 2017.
  • Shen S, Bui AAT, Hsu W. Robust lung nodule classification using 2.5D convolutional neural network. Proc AMIA Fall Symp 2017. Washington, D.C.; 2017.
  • Shen S, Han SX, Petousis P, Weiss RE, Meng F, Bui AAT, Hsu W. A Bayesian model for estimating multi-state disease progression. Comput Biol Med. 2017 Feb 1;81:111-120. DOI: 10.1016/j.compbiomed.2016.12.011. Epub 2016 Dec 22. PMID: 28038345; PMCID: PMC5508542PDF
  • Speier W, Chandravadia N, Roberts D, Pendekanti S, Pouratian N. Online BCI Typing using Language Model Classifiers by ALS Patients in their Homes. Brain Comput Interfaces (Abingdon). 2017;4(1-2):114-121. DOI: 10.1080/2326263X.2016.1252143. Epub 2016 Nov 15. PMID: 29051907; PMCID: PMC5644496.
  • Speier W, Deshpande A, Cui L, Chandravadia N, Roberts D, Pouratian N. A comparison of stimulus types in online classification of the P300 speller using language models. PLoS One. 2017 Apr 13;12(4):e0175382. DOI: 10.1371/journal.pone.0175382. PMID: 28406932; PMCID: PMC5391014.
  • Winter A, Daurès JP, Landais P. Response to why the donor risk index and Eurotransplant donor risk index may also be applicable in France; reply to Winter et al. and statistical perspective. Liver Int. 2017 Oct;37(10):1573. DOI: 10.1111/liv.13507. PMID: 28940954PDF
  • Winter A, Féray C, Audureau E, Écochard R, Jacquelinet C, Roudot-Thoraval F, Duvoux C, Daurès JP, Landais P. External validation of the Donor Risk Index and the Eurotransplant Donor Risk Index on the French liver transplantation registry. Liver Int. 2017 Aug;37(8):1229-1238. DOI: 10.1111/liv.13378. Epub 2017 Feb 23. PMID: 28140515.PDF